Bio.Sequencing 套件
子套件
- Bio.Sequencing.Applications 套件
- 模組內容
BwaIndexCommandlineBwaAlignCommandlineBwaAlignCommandline.__init__()BwaAlignCommandline.BBwaAlignCommandline.EBwaAlignCommandline.IBwaAlignCommandline.MBwaAlignCommandline.NBwaAlignCommandline.OBwaAlignCommandline.RBwaAlignCommandline.bBwaAlignCommandline.b1BwaAlignCommandline.b2BwaAlignCommandline.cBwaAlignCommandline.dBwaAlignCommandline.eBwaAlignCommandline.iBwaAlignCommandline.kBwaAlignCommandline.lBwaAlignCommandline.nBwaAlignCommandline.oBwaAlignCommandline.qBwaAlignCommandline.read_fileBwaAlignCommandline.referenceBwaAlignCommandline.t
BwaSamseCommandlineBwaSampeCommandlineBwaBwaswCommandlineBwaBwaswCommandline.__init__()BwaBwaswCommandline.NBwaBwaswCommandline.TBwaBwaswCommandline.aBwaBwaswCommandline.bBwaBwaswCommandline.cBwaBwaswCommandline.mate_fileBwaBwaswCommandline.qBwaBwaswCommandline.rBwaBwaswCommandline.read_fileBwaBwaswCommandline.referenceBwaBwaswCommandline.sBwaBwaswCommandline.tBwaBwaswCommandline.wBwaBwaswCommandline.z
BwaMemCommandlineBwaMemCommandline.__init__()BwaMemCommandline.ABwaMemCommandline.BBwaMemCommandline.CBwaMemCommandline.EBwaMemCommandline.HBwaMemCommandline.LBwaMemCommandline.MBwaMemCommandline.OBwaMemCommandline.PBwaMemCommandline.RBwaMemCommandline.TBwaMemCommandline.UBwaMemCommandline.aBwaMemCommandline.cBwaMemCommandline.dBwaMemCommandline.kBwaMemCommandline.pBwaMemCommandline.rBwaMemCommandline.read_file1BwaMemCommandline.read_file2BwaMemCommandline.referenceBwaMemCommandline.tBwaMemCommandline.vBwaMemCommandline.w
NovoalignCommandlineNovoalignCommandline.__init__()NovoalignCommandline.adapter3NovoalignCommandline.adapter5NovoalignCommandline.coresNovoalignCommandline.databaseNovoalignCommandline.formatNovoalignCommandline.fragmentNovoalignCommandline.gap_extendNovoalignCommandline.gap_openNovoalignCommandline.good_basesNovoalignCommandline.homopolymerNovoalignCommandline.miRNANovoalignCommandline.qual_digitsNovoalignCommandline.qualityNovoalignCommandline.r_methodNovoalignCommandline.read_calNovoalignCommandline.readfileNovoalignCommandline.recordedNovoalignCommandline.repeatsNovoalignCommandline.reportNovoalignCommandline.thresholdNovoalignCommandline.trimmingNovoalignCommandline.truncateNovoalignCommandline.unconvertedNovoalignCommandline.variationNovoalignCommandline.write_cal
SamtoolsViewCommandlineSamtoolsViewCommandline.__init__()SamtoolsViewCommandline.FSamtoolsViewCommandline.HSamtoolsViewCommandline.RSamtoolsViewCommandline.SSamtoolsViewCommandline.bSamtoolsViewCommandline.cSamtoolsViewCommandline.fSamtoolsViewCommandline.fast_bamSamtoolsViewCommandline.hSamtoolsViewCommandline.input_fileSamtoolsViewCommandline.lSamtoolsViewCommandline.oSamtoolsViewCommandline.qSamtoolsViewCommandline.rSamtoolsViewCommandline.regionSamtoolsViewCommandline.tSamtoolsViewCommandline.u
SamtoolsCalmdCommandlineSamtoolsCalmdCommandline.__init__()SamtoolsCalmdCommandline.ASamtoolsCalmdCommandline.CSamtoolsCalmdCommandline.ESamtoolsCalmdCommandline.SSamtoolsCalmdCommandline.bSamtoolsCalmdCommandline.eSamtoolsCalmdCommandline.input_bamSamtoolsCalmdCommandline.rSamtoolsCalmdCommandline.refSamtoolsCalmdCommandline.u
SamtoolsCatCommandlineSamtoolsFaidxCommandlineSamtoolsFixmateCommandlineSamtoolsIdxstatsCommandlineSamtoolsIndexCommandlineSamtoolsMergeCommandlineSamtoolsMpileupCommandlineSamtoolsMpileupCommandline.__init__()SamtoolsMpileupCommandline.ASamtoolsMpileupCommandline.BSamtoolsMpileupCommandline.CSamtoolsMpileupCommandline.DSamtoolsMpileupCommandline.ESamtoolsMpileupCommandline.ISamtoolsMpileupCommandline.LSamtoolsMpileupCommandline.MSamtoolsMpileupCommandline.QSamtoolsMpileupCommandline.SSamtoolsMpileupCommandline.bSamtoolsMpileupCommandline.dSamtoolsMpileupCommandline.eSamtoolsMpileupCommandline.fSamtoolsMpileupCommandline.gSamtoolsMpileupCommandline.hSamtoolsMpileupCommandline.illumina_13SamtoolsMpileupCommandline.input_fileSamtoolsMpileupCommandline.lSamtoolsMpileupCommandline.oSamtoolsMpileupCommandline.pSamtoolsMpileupCommandline.qSamtoolsMpileupCommandline.rSamtoolsMpileupCommandline.u
SamtoolsPhaseCommandlineSamtoolsReheaderCommandlineSamtoolsRmdupCommandlineSamtoolsSortCommandlineSamtoolsVersion0xSortCommandlineSamtoolsVersion1xSortCommandlineSamtoolsTargetcutCommandline
- 模組內容
子模組
模組內容
用於處理各種定序和組裝程式碼。
此程式碼處理諸如 Phred、Phrap 和 Consed 等程式，這些程式提供從定序讀取中呼叫鹼基，並將序列組裝成重疊群的工具。